Company Profile

Epsilon Molecular Engineering Co., Ltd. (EME) will realize the social implementation of VHH in a wide range of fields, including pharmaceuticals, in vitro diagnostics, and research reagents, using "The Month," a high-speed VHH screening and profiling service that combines "cDNA display technology" with "PharmaLogical® Library," a proprietary humanized VHH artificial library designed from structural information in a database.

Three advantages in obtaining EME antibodies

1. Ultra-fast screening in as little as 30 business days: "The Month"

We have developed a fully in vitro, high-speed screening system. We can provide hit sequences with excellent target binding properties in just 30 business days.

2. Addressing difficult-to-target (membrane proteins)

Antibodies can be obtained against various types of targets. Screening is supported not only with recombinant antigens but also with expressing cells.

3. Animal-free antibody acquisition

Since the entire process is completed in vitro, it is possible to design the system with ESG compliance in mind. Data can also be provided. This enables free exploration unconstrained by immunology.

About Us

Company NameEpsilon Molecular Engineering Co., Ltd.
AddressZip code:338-8570 
255 Shimookubo, Sakura-ku, Saitama City, Saitama Prefecture
Room 208, Research Building, Open Innovation Center, Saitama University (Building No. 34 on the Saitama University campus map)
Saitama University Campus Map (PDF)
RepresentativeNaoto Nemoto, President and Representative Director
EstablishmentAugust 19, 2016
CapitalJPY 10,000
Business Overview
  • Contract research for functional biomolecules such as VHH antibodies and peptides.
  • Joint research and development of next-generation biopharmaceuticals and diagnostic agents
  • Licensing of evolutionary molecular engineering platform technology
Employees14 people (as of September 2026)

Message from CEO

In the fields of next-generation drug discovery and biochemical materials, the ability to quickly and reliably obtain superior antibodies and peptides is a crucial factor that determines the success or failure of a project.
I have dedicated many years to the study of evolutionary molecular engineering. Within that context, I developed our "cDNA display technology" to overcome the limitations of conventional animal immunization and phage display methods, and to bring innovation to the field of functional materials, including drug discovery.
EME's services go beyond simply providing screening services. Highly specialized Ph.D. researchers gathered in Saitama University's cutting-edge labs are deeply committed to our clients' target proteins and challenges, creating high-quality lead molecules at an overwhelming speed of as little as 30 business days.
We aspire to be the best technology partner for drug discovery researchers and applied chemistry researchers around the world, supporting the social implementation of next-generation modalities.

Epsilon Molecular Engineering Co., Ltd.
Naoto Nemoto, President and Representative Director

Biography

1996
Completed doctoral program in Biological and Environmental Sciences, Graduate School of Science and Engineering, Saitama University. Doctor of Philosophy (Academic).
Special Researcher, Mitsubishi Chemical Life Science Institute, Inc.
1999
Senior Researcher, Gencom Co., Ltd.
2003
BioVision Capital Co., Ltd. Director, Head of Research Planning
Visiting Researcher, Venture Development Strategy Research Center, National Institute of Advanced Industrial Science and Technology (AIST)
2006
Genesis Co., Ltd. Executive Officer and Chief Scientific Officer

2008
Associate Professor, Department of Materials Science, Graduate School of Science and Engineering, Saitama University
2015
Professor, Department of Materials Science, Graduate School of Science and Engineering, Saitama University
2016
Director, EME Co., Ltd.
2017
EME Co., Ltd. Representative Director

Science and technology advisor

  • Yuzuru Fushimi
    Yuzuru Fushimi

    Professor Emeritus, Saitama University; Director of Advanced Measurement Development, Japan Science and Technology Agency
    • molecular biophysics
    • evolutionary molecular engineering
    • Biomeasurement

    He began his research on experimental molecular evolution at Saitama University. After studying abroad at the Max Planck Institute, he developed "CellStat," which forms the basis of evolutionary molecular engineering. He named mRNA-nascent protein conjugates "in vitro viruses" and further developed the theory of protein evolution in vitro.

  • Junichi Nakai
    Junichi Nakai

    Professor Emeritus, Tohoku University; Professor Emeritus, Saitama University
    • molecular physiology
    • Neurophysiology
    • fluorescence imaging

    After working as an internist, I transitioned to research in molecular biology and physiology. In 2001, I developed a fluorescent calcium sensor molecule (G-CaMP) that reacts to calcium ions, and I am currently conducting research to elucidate cellular functions using fluorescence imaging in vivo.

  • Yasushi Kubo
    Yasushi Kubo

    Science Fellow, Glycotechnology Research Institute Co., Ltd.
    ProteoBridge Co., Ltd. Director and CTO
    • Neuromolecular physiology
    • Peptide Engineering
    • In vitro evolution

    Having honed his skills in the physiological biochemistry and molecular biology of peptides and proteins, he held positions at institutions such as the National Institute of Advanced Industrial Science and Technology (AIST) before assuming his current position. Building upon his research into naturally occurring bioactive peptides, he entered the field of in vitro evolution, pursuing research that emphasizes the joy of creating new molecules and the potential for social contribution.

  • Takuya Terai
    Takuya Terai

    Associate Professor, Graduate School of Science, The University of Tokyo
    • Chemical biology
    • photofunctional molecules
    • Protein Engineering

    Graduated from the Faculty of Pharmaceutical Sciences, University of Tokyo, with a PhD in Pharmaceutical Sciences. Engaged in the development of photo-functional molecules, including fluorescent sensors, drug discovery through small molecule screening, and the exploration of functional polypeptides using evolutionary molecular engineering. Leveraging this expertise, she contributes to EME's technological development.

  • Kenzo Fujimoto
    Kenzo Fujimoto

    Professor, Japan Advanced Institute of Science and Technology (JAIST)
    • Nucleic acid drugs
    • RNA editing
    • Ultrafast DNA optical manipulation

    He holds a PhD in Engineering from Kyoto University Graduate School. His work focuses on developing DNA/RNA manipulation methods using uniquely designed photoresponsive molecules, leading the development of technologies for photo-controlled intracellular gene expression and light-based RNA editing. Leveraging his expertise in nucleic acid chemistry and other related fields, he advises EME on peptide drug discovery.

  • Kosuke Matsunaga
    Kosuke Matsunaga

    Associate Professor, Graduate School of Science and Engineering, Saitama University
    • computational biology
    • Molecular dynamics
    • Machine learning

    Completed doctoral program at Kobe University Graduate School of Science in 2007, PhD (Science). Engaged in molecular dynamics simulations of biomolecules and molecular modeling utilizing machine learning. Leveraging expertise in computational science and AI-based dry methods, I provide advice on data analysis and sequence optimization.

History

June 2016Epsilon Molecular Engineering Co., Ltd. was established (Saitama City, Saitama Prefecture).
June 2017Selected for NEDO-STS Grant Program
June 2018MU-TECH Research and Development Grant Awarded
June 2020Selected for the Support Program for Innovative Development
AprilAMED project selected
2020Series A Procurement
June 2021PharmaLogical Library Implementation - VHH HTS Platform "The Month" Deployment
June 2022Selected for Saitama Prefecture's Manufacturing Support Program
Selected for the Saitama City Innovation Creation Subsidy Program
June 2024Saitama City Industrial Creation Foundation: Subsidy for the Development of New Businesses and Services Utilizing Digital Technology - Selected
June 2025Saitama City Research and Development Human Resources Enhancement Task Force Project - Selected
June 2026Saitama Prefecture New Technology and New Product Development Support Subsidy - Selected
Selected for the Growth-Oriented SME Research and Development Support Program (Go-Tech Program)

Access

Headquarters and Labs (Research and Development Centers)
255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama Prefecture 338-8570
Inside the Saitama University Open Innovation Center Research Building

JR line
From the west exit of Kita-Urawa Station, take the Seibu Bus bound for Saitama University (approximately 15 minutes).
Get off at the last stop.
JR line
From the west exit of Minami-Yono Station, take the bus bound for Saitama University from the North Entrance bus stop (approximately 10 minutes).

Electronic Public Notice

In accordance with the law, we hereby publish our financial statements and other advertising information.

There are currently no electronic announcements to be made.

Intellectual Property and Confidentiality Policy

Flexible intellectual property strategies and co-creation
In joint research and partnerships, we respect each other's expertise and flexibly discuss and decide on the optimal ownership of rights (sharing, transfer, exclusive use, etc.) based on the degree of contribution and business model.
Responding to the transfer of rights to deliverables
In our contracted services, we prioritize maximizing our clients' business competitiveness when it comes to the rights to deliverables. Depending on the nature of the project, we will propose a contract structure that is tailored to your business, including the option of 100% rights transfer.
Strict information management and confidentiality
Confidential information entrusted to us and knowledge gained from collaborative research will be strictly managed through organizational and technical measures. All employees are bound by confidentiality obligations, and we will thoroughly prevent their use for purposes other than those intended or their disclosure to third parties.
Compliance with laws and contracts
We will comply with relevant laws and regulations, including the Unfair Competition Prevention Act, and the confidentiality agreements (NDAs) we have signed, and promote honest business activities with a high level of ethical awareness befitting a university-based venture company.
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